species:   Clros
pid:       PID1836
parent:    cro-mir-2
paralog:   
locus:     CADEHS020000002.2:2259334-2259412
matures:   ['UAGAAUUCGGGGUAGAAUG', '']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000002.2:2259334-2259412

4180 out of bounds
5530 alignments
5503 proper strand
5466 stranded perfect matches

****************                                          *********************
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCUAACAUUCACAUUGCCGCCAUAGAAUUCGGGGUAGAAUG
(((((((((((((((((((((((............................))))))))))))))))))))))).....
------------------------------------------------------------UAGAAUUCGGGGUAGAAUG l=19 a=4623 c
------------------------------------------------------------------------------- l=0 a=0 c*
------------------------------------------------------------UAGAAUUCGGGGUAGAAUG l=19 a=4623 ma
------------------------------------------------------------------------------- l=0 a=0 ma*

---------------------------------------------------------------AAUUCGGGGUAGAAU- l=15 a=2 
--------------------------------------------------------------GAAUUCGGGGUAGAAa- l=16 a=1 
--------------------------------------------------------------GAAUUCGGGGUAGAAUG l=17 a=2 
-------------------------------------------------------------AGAAUUCGGGGUAGAAU- l=17 a=1 
-------------------------------------------------------------AGAAUUCGGGGUAGAAUG l=18 a=5 
------------------------------------------------------------UAGAAUUCGGGGUA----- l=14 a=24 
------------------------------------------------------------UAGAAUUCGGGGUAG---- l=15 a=3 
------------------------------------------------------------UAGAAUUCGGGGUAGA--- l=16 a=9 
------------------------------------------------------------UAGAAUUCGGGGUAGAA-- l=17 a=17 
------------------------------------------------------------UAGAAUUCGGGGUAGAAU- l=18 a=694 
------------------------------------------------------------UAGuAUUCGGGGUAGAAU- l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAa- l=18 a=3 
------------------------------------------------------------UAGAAUUCGGGGUAGuAU- l=18 a=1 
------------------------------------------------------------UAGAAUaCGGGGUAGAAU- l=18 a=1 
------------------------------------------------------------UgGAAUUCGGGGUAGAAU- l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAc- l=18 a=1 
------------------------------------------------------------UAGAAgUCGGGGUAGAAU- l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAuU- l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAUG l=19 a=4623 (c,ma)
------------------------------------------------------------UAGAAUUCGGGGUAGAAUc l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGcAGAAUG l=19 a=4 
------------------------------------------------------------cAGAAUUCGGGGUAGAAUG l=19 a=4 
------------------------------------------------------------aAGAAUUCGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUuGGGGUAGAAUG l=19 a=2 
------------------------------------------------------------UAGAAUUCGuGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUCGcGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGaUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUaCGGGGUAGAAUG l=19 a=2 
------------------------------------------------------------UAGAAUUCGGGGaAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAcUG l=19 a=1 
------------------------------------------------------------UgGAAUUCGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAcUCGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAaG l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAcG l=19 a=2 
------------------------------------------------------------UAGgAUUCGGGGUAGAAUG l=19 a=1 
-----------------------------------------------------------AUAGAAUUCGGGGUAGAAUG l=20 a=1 
----------------------------------------------UCACAUUGCCGCCAUAGAAUUCGGa-------- l=25 a=1 
----------------------------CUGCCGCGAUC---------------------------------------- l=11 a=1 
---------------------------CCUGCCGCGAU----------------------------------------- l=11 a=1 
---------------------------CCUGCCGCGAUC---------------------------------------- l=12 a=6 
----------------GCGGCAACUAACCUGCCGCGAUCCUAACAUUCACAUUGCCGCCA------------------- l=44 a=20 
---------UUCUAUGGCGGC---------------------------------------------------------- l=12 a=2 
----CCGAAUUCUAUG--------------------------------------------------------------- l=12 a=2 
----CCGAAUUCUAUGGCGGCAAC------------------------------------------------------- l=20 a=1 
----CCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCUAACAUUCACAUUGC------------------------ l=51 a=1 
UACCCCGAAUUCUAUGGC------------------------------------------------------------- l=18 a=1 
UACCCCGAAUUCUAUGGCG------------------------------------------------------------ l=19 a=2 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCG--------------------------------------------- l=34 a=1 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGA------------------------------------------ l=37 a=1 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAU----------------------------------------- l=38 a=2 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUC---------------------------------------- l=39 a=6 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCC--------------------------------------- l=40 a=11 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCU-------------------------------------- l=41 a=1 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCUAA------------------------------------ l=43 a=1 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCUAACA---------------------------------- l=45 a=2 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCUAACAUUCACA---------------------------- l=51 a=23 

mb-00010
ax-0011100
ku-11
ss-101011111010
fn-111
